Publication

* Equal contributions; Corresponding.


Pre-prints

    arXiv
  1. Song Feng, Orkun S. Soyer, In silico evolution of signaling networks using rule-based models: bistable response dynamics. arXiv preprint arXiv:1802.00462

Peer-reviewed

    2015-2020
  1. Ryan Suderman, Eishan D. Mitra, Yen-ting Lin, Keesha E. Erickson, Song Feng, William S. Hlavacek, (2018) Generalizing Gillespie's direct method to enable network-free simulations. Bull. Math. Biol. doi:10.1007/s11538-018-0418-2 (arXiv:1801.10227)
  2. Xue Jiang, Christian Zerfa, Song Feng, Ruth Eichmann, Munehiro Asally, Patrick Schfer, Orkun S Soyer (2018) Impact of spatial organization on a novel auxotrophic interaction among soil microbes. ISME J. doi:10.1038/s41396-018-0095-z
  3. Matteo Cavaliere, Song Feng, Orkun S Soyer, José I Jiménez (2017) Cooperation in microbial communities and their biotechnological applications. Environ. Microbiol. 19 (8), 2949-2963. doi:10.1111/1462-2920.13767
  4. Song Feng*, Meritxell Sáez*, Carsten Wiuf, Elisenda Feliu, Orkun S Soyer (2016) Core signalling motif displaying multistability through multi-state enzymes. J. R. Soc. Interface 13 (123), 20160524. doi:10.1098/rsif.2016.0524
  5. Song Feng, Julien F Ollivier, Orkun S Soyer (2016) Enzyme sequestration as a tuning point in controlling response dynamics of signalling networks. PLoS Comput. Biol. 12(5): e1004918. doi:10.1371/journal.pcbi.1004918
  6. Song Feng*, Julien F Ollivier*, Peter S Swain, Orkun S Soyer (2015) BioJazz: in silico evolution of cellular networks with unbounded complexity using rule-based modelling. Nucleic Acids Res., pp. 1-15. ISSN 0305-1048 doi:10.1093/nar/gkv595