* equal contributions; Corresponding.


  1. Song Feng, Orkun S. Soyer, In silico evolution of signaling networks using rule-based models: bistable response dynamics, arXiv preprint arXiv:1802.00462


  1. Ryan Suderman, Eishan D. Mitra, Yen-ting Lin, Keesha E. Erickson, Song Feng, William S. Hlavacek, Generalizing Gillespie's direct method to enable network-free simulations, Bull Math Biol. Inpress (arXiv:1801.10227)
  2. Xue Jiang, Christian Zerfa, Song Feng, Ruth Eichmann, Munehiro Asally, Patrick Schfer, Orkun S Soyer (2018) Impact of spatial organization on a novel auxotrophic interaction among soil microbes, The ISME Journal. In press
  3. Matteo Cavaliere, Song Feng, Orkun S Soyer, José I Jiménez (2017) Cooperation in microbial communities and their biotechnological applications, Environmental Microbiology 19 (8), 2949-2963. doi:10.1111/1462-2920.13767
  4. Song Feng*, Meritxell Sáez*, Carsten Wiuf, Elisenda Feliu, Orkun S Soyer (2016) Core signalling motif displaying multistability through multi-state enzymes. Journal of The Royal Society Interface 13 (123), 20160524. doi:10.1098/rsif.2016.0524
  5. Song Feng, Julien F Ollivier, Orkun S Soyer (2016) Enzyme sequestration as a tuning point in controlling response dynamics of signalling networks. PLoS Comput Biol 12(5): e1004918. doi:10.1371/journal.pcbi.1004918
  6. Song Feng*, Julien F Ollivier*, Peter S Swain, Orkun S Soyer (2015) BioJazz: in silico evolution of cellu- lar networks with unbounded complexity using rule-based modelling. Nucleic Acids Research, pp. 1-15. ISSN 0305-1048 doi:10.1093/nar/gkv595